Flavivirus research using scRNA-seq
| Virus type | Sample type | Collection condition | Code | Repository | Reference |
|---|---|---|---|---|---|
| DENV-4 | PBMC | 2 patients at 3 time points | E-MTAB-9467 | ArrayExpress | [41] |
| DENV-1 | PBMC | 3 patients at 8 time points post-experimental infection 2 patients at 3 time points post-natural infection |
GSE154386 | GEO | [42] |
| ZIKV | Cell line | HepG2 cells at 48 h post-infection | GSE147093 & GSE147094 | GEO | [43] |
DENV, dengue virus; GEO, gene expression omnibus; PBMC, peripheral blood mononuclear cell; scRNA-seq, single-cell RNA sequencing; ZIKV, Zika virus.